PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013610034.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 183aa    MW: 20601.3 Da    PI: 6.4199
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013610034.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601162.3e-367106199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+ dCv++pyf  eq +++fa+vhk+FGasnv+k l +lp ++r++a+ ++ yeA  r+ dPvyG+v++i++lqqq+++l++e+
  XP_013610034.1   7 SCGACKFLRRKCNIDCVFSPYFSYEQaSSHFAAVHKVFGASNVSKHLLSLPLHQRSAAAITISYEALSRMCDPVYGCVAHIFALQQQVMTLQVEI 101
                     6***********************9978******************************************************************9 PP

          DUF260  95 allke 99 
                     + l++
  XP_013610034.1 102 EFLGT 106
                     98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.4316108IPR004883Lateral organ boundaries, LOB
PfamPF031954.4E-347103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MAAHGSSCGA CKFLRRKCNI DCVFSPYFSY EQASSHFAAV HKVFGASNVS KHLLSLPLHQ  60
RSAAAITISY EALSRMCDPV YGCVAHIFAL QQQVMTLQVE IEFLGTHMAN LSNTTQSRSQ  120
PNDMPEFLNQ MTMDTTTGFI DQTVLHNDVG INCIEGFFTN PEEVLVNHPW FQNMDHYYYA  180
PQH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013610034.11e-138PREDICTED: LOB domain-containing protein 33
SwissprotQ9LHS81e-101LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A0D3EHG31e-138A0A0D3EHG3_BRAOL; Uncharacterized protein
STRINGBra009161.1-P1e-135(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.11e-102LOB domain-containing protein 33